GSR: Simulator - SCNVsim

Basic Package Attributes
Attribute	Value
Title	SCNVsim
Short Description	Java simulator for somatic copy-number and structural variation in cancer genomes.
Long Description	SCNVSim simulates cancer-cell-population genomes with somatic CNV and structural-variation events, including tumor purity, aneuploidy, heterogeneity, loss of heterozygosity, copy-number states, and breakpoint information for benchmarking somatic CNV/SV detection methods.
Keywords	copy number variation; structural variation; somatic variation; cancer genome; Java; benchmark simulation
Version	1.3.1
Homepage	https://sourceforge.net/projects/scnvsim/
Citations
GSR Certification	This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Haploid DNA Sequence,
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type	Genotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface	Command-line,
Development
Tested Platforms	Linux and Unix,
Language	Java,
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using SCNVsim has been provided.

Please propose new citations if you are aware of publications that use this software.

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