GSR: Simulator - scReadSim

Basic Package Attributes
Attribute	Value
Title	scReadSim
Short Description	Single-cell RNA-seq and ATAC-seq read simulator with user-specified ground truths.
Long Description	scReadSim is a Python package that simulates realistic single-cell RNA-seq and single-cell ATAC-seq reads at both read-count and read-sequence levels. It supports user-specified ground truths for benchmarking downstream analyses.
Keywords	single-cell RNA-seq; single-cell ATAC-seq; read simulation; Python; FASTQ; benchmarking
Version	1.4.1
Homepage	https://github.com/JSB-UCLA/scReadSim
Citations
GSR Certification	This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Sequencing Reads,
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type	Genotype or Sequence,
Sequencing Reads
File Format	Fasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface	Command-line, Script-based,
Development
Tested Platforms	Linux and Unix,
Language	Python,
License	MIT,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using scReadSim has been provided.

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