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GSR: Simulator - SELVa
| Attribute | Value |
|---|---|
| Title | SELVa |
| Short Description | Simulator of evolution with landscape variation |
| Long Description | SELVa is a simulator of sequence evolution that allows the fitness landscape to vary according to user-specified rules. It is geared towards exploring the effects of landscape change on molecular sequence evolution. SELVa has a variety of options for specifying the rules of landscape change, allowing the user to tailor the simulation to his or her needs and to explore various evolutionary scenarios. |
| Version | 0.2 |
| Project Started | 2019 |
| Last Release | 6 years, 5 months ago |
| Homepage | https://github.com/bazykinlab/SELVa |
| Citations | Nabieva E, Bazykin GA, SELVa: Simulator of evolution with landscape variation., PLoS One, Dec. 2, 2020 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | July 8, 2021 (1529 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | Single Nucleotide Variation, |
| Simulation Method | Gene dropping, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
| Gene Flow | |
| Spatiality | Discrete Models, Continuous Models, Landscape Factors, |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | Java, |
| License | MIT, |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SELVa has been provided.
Please propose new citations if you are aware of publications that use this software.