GSR: Simulator - SELVa
Attribute | Value |
---|---|
Title | SELVa |
Short Description | Simulator of evolution with landscape variation |
Long Description | SELVa is a simulator of sequence evolution that allows the fitness landscape to vary according to user-specified rules. It is geared towards exploring the effects of landscape change on molecular sequence evolution. SELVa has a variety of options for specifying the rules of landscape change, allowing the user to tailor the simulation to his or her needs and to explore various evolutionary scenarios. |
Version | 0.2 |
Project Started | 2019 |
Last Release | 4 years, 11 months ago |
Homepage | https://github.com/bazykinlab/SELVa |
Citations | Nabieva E, Bazykin GA, SELVa: Simulator of evolution with landscape variation., PLoS One, 12-02-2020 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 07-08-2021 (1010 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Genotype at Genetic Markers, |
Variations | Single Nucleotide Variation, |
Simulation Method | Gene dropping, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
Gene Flow | |
Spatiality | Discrete Models, Continuous Models, Landscape Factors, |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | |
Development | |
Tested Platforms | |
Language | Java, |
License | MIT, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SELVa has been provided.
Please propose new citations if you are aware of publications that use this software.