GSR: Simulator - Serial NetEvolve

Basic Package Attributes
Title Serial NetEvolve
Short Description A flexible utility for generating serially-sampled sequences along a tree or recombinant network
Long Description Serial NetEvolve is a modification of the Treevolve program in which serially sampled sequences are evolved along a randomly generated coalescent tree or network (Grassly et al. 1999; Hudson 1983; Kingman 1982) . Treevolve offers a variety of evolutionary model and population parameters including a rate of recombination and as such it was chosen over other programs to be adapted for the simulation of serially sampled data. The new features include the choice of either a clock-like model of evolution or a variable rate of evolution, simulation of serial samples and the output of the randomly generated tree or network in Newick format or in our newly formulated NeTwick format.
Version 1.0
Project Started 2006
Last Release 14 years, 6 months ago
Citations Buendia P, Narasimhan G, Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network., Bioinformatics, 09-15-2006 [ Abstract, cited in PMC ]
GSR Certification This package has been evaluated. No certificates were awarded at this time.
Last evaluated03-28-2020 (286 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Type of Simulated DataHaploid DNA Sequence,
VariationsBiallelic Marker,
Simulation MethodStandard Coalescent,
Data Type
File formatPhylip,
Data TypeGenotype or Sequence, Phenotypic Trait,
Sequencing Reads
File Format
Sample Type
Trait Type
Evolutionary Features
Population Size ChangesConstant Size, Exponential Growth or Decline,
Gene FlowIsland Models,
Life Cycle
Mating SystemRandom Mating,
Natural Selection
RecombinationVarying Recombination Rates,
Mutation ModelsMarkov DNA Evolution Models,
Events Allowed
InterfaceCommand-line, Graphical User Interface,
Tested PlatformsWindows, Linux and Unix,
LanguageC or C++,
LicenseGNU Public License,
GSR Certification

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