GSR: Simulator - SimAdapt

Basic Package Attributes
AttributeValue
Title SimAdapt
Short Description A spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton.
Long Description SimAdapt is a spatially explicit, individual-based, forward-time, landscape-genetic simulation model combined with a landscape cellular automaton to represent evolutionary processes of adaptation and population dynamics in changing landscapes, using the NetLogo environment.
Version 20.08
Project Started 2012
Last Release 7 years, 6 months ago
Homepagehttps://www.openabm.org/model/3137
Citations Rebaudo F., Le Rouzic A., Dupas S., Silvain J.F., Harry M., Dangles O., SimAdapt: an individual-based genetic model for simulating landscape management impacts on populations, Methods in Ecology and Evolution, 06-01-2013
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated03-12-2020 (219 days ago)
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers,
VariationsBiallelic Marker, Multiallelic Marker, Microsatellite,
Simulation MethodForward-time, Other,
Input
Data TypeAllele Frequencies, Other,
File formatFstat, Program Specific, Other,
Output
Data TypeGenotype or Sequence, Demographic, Fitness,
Sequencing ReadsOther,
File FormatArlequin, Fstat, Genepop, STRUCTURE, Program Specific, Other,
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers, Sex-linked, Environmental Factors, Gene-Environment Interaction,
Evolutionary Features
Demographic
Population Size ChangesLogistic Growth, User Defined,
Gene FlowOther,
Spatiality
Life CycleDiscrete Generation Model,
Mating SystemRandom Mating, Other,
FecundityIndividually Determined, Influenced by Environment,
Natural Selection
DeterminantMulti-locus, Fitness of Offspring, Environmental Factors,
ModelsMulti-locus models, Other,
Recombination
Mutation ModelsStepwise Mutation Model,
Events AllowedPopulation Merge and Split, Varying Demographic Features, Population Events, Varying Genetic Features, Other,
Other
InterfaceCommand-line, Graphical User Interface,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguageOther,
License
GSR CertificationAccessibility, Documentation,

No example publication using SimAdapt has been provided.

Please propose new citations if you are aware of publications that use this software.


Propose changes to this simulator