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GSR: Simulator - SimBit
| Attribute | Value |
|---|---|
| Title | SimBit |
| Short Description | Simbit is an all-purpose, high-performance forward-in-time population genetics simulator. |
| Long Description | Simbit is an all-purpose, high-performance forward-in-time population genetics simulator. The software is capable of simulating selection scenarios, demographic scenarios, and mating systems. Simbit can also simulate multiple species along with their ecological relationships. The package comes with an R wrapper that simplifies the management of research projects from the creation of a grid of parameters, and can run simulations and gather inputs for analysis. |
| Version | 3.9.13 |
| Project Started | 2018 |
| Last Release | 5 years, 6 months ago |
| Homepage | https://github.com/RemiMattheyDoret/SimBit |
| Citations | Matthey-Doret R, SimBit: A high performance, flexible and easy-to-use population genetic simulator., Mol Ecol Resour, July 1, 2021 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | May 17, 2022 (1192 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, Diploid DNA Sequence, Sequencing Reads, |
| Variations | Biallelic Marker, Microsatellite, |
| Simulation Method | Forward-time, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | Constant Size, Exponential Growth or Decline, Logistic Growth, Bottleneck, Carrying Capacity, User Defined, |
| Gene Flow | Stepping Stone Models, Island Models, Continent-Island Models, Sex or Age-Specific Migration Rates, Influenced by Environmental Factors, Admixed Population, User-defined Matrix, Other, |
| Spatiality | Discrete Models, Continuous Models, Landscape Factors, |
| Life Cycle | |
| Mating System | Random Mating, |
| Fecundity | |
| Natural Selection | |
| Determinant | Single-locus, Multi-locus, |
| Models | |
| Recombination | Uniform, |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | |
| Language | C or C++, |
| License | Other, |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SimBit has been provided.
Please propose new citations if you are aware of publications that use this software.