GSR: Simulator - SimBu

Basic Package Attributes
Attribute	Value
Title	SimBu
Short Description	R/Bioconductor package for bias-aware simulation of pseudo-bulk RNA-seq data from single-cell data.
Long Description	SimBu simulates bulk RNA-seq datasets with known cell-type fractions by sampling and mixing single-cell RNA-seq profiles under configurable scenarios, enabling benchmark data with controlled cell composition and bias.
Keywords	bulk RNA-seq; single-cell RNA-seq; pseudo-bulk; cell type fractions; benchmark simulation; R; Bioconductor
Version	1.14.0
Homepage	https://bioconductor.org/packages/SimBu/
Citations
GSR Certification	This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Sequencing Reads,
Variations
Simulation Method
Input
Data Type	Empirical,
File format
Output
Data Type	Genotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface	Command-line, Script-based,
Development
Tested Platforms	Linux and Unix,
Language	R,
License	GNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using SimBu has been provided.

Please propose new citations if you are aware of publications that use this software.

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