GSR: Simulator - simCAS

Basic Package Attributes
Attribute	Value
Title	simCAS
Short Description	Embedding-based simulator for single-cell chromatin accessibility sequencing data.
Long Description	simCAS simulates single-cell chromatin accessibility sequencing peak-by-cell matrices from cell-wise and peak-wise low-dimensional embeddings. It supports pseudo-cell-type, discrete, and continuous modes, plus optional batch effects and cis-regulatory interaction ground truths for benchmarking scCAS analysis methods.
Keywords	single-cell chromatin accessibility; scATAC-seq; scCAS; embedding; trajectory simulation; benchmarking
Version	2023-09-28
Homepage	https://github.com/Chen-Li-17/simCAS
Citations
GSR Certification	This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verification	The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.

Detailed Attributes
Attribute Category	Attribute
Target
Type of Simulated Data	Sequencing Reads,
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type	Genotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface	Command-line, Script-based,
Development
Tested Platforms	Linux and Unix,
Language
License	GNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using simCAS has been provided.

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