GSR: Simulator - SIMER

AttributeValue
TitleSIMER
Short DescriptionR package for simulating customizable population, genotype, phenotype, pedigree, and breeding-program data.
Long DescriptionSIMER simulates population data for humans, animals, plants, and microorganisms, including genotypes, phenotypes under linear mixed models, pedigrees, reproduction modes, selection schemes, and breeding-program design.
Keywordspopulation simulation; breeding program; genotypes; phenotypes; pedigree; linear mixed model; R; CRAN
Version1.0.0
Homepagehttps://cran.r-project.org/package=simer
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Sequencing Reads,
VariationsSingle Nucleotide Variation,
Simulation MethodForward-time,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguageR,
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using SIMER has been provided.

Please propose new citations if you are aware of publications that use this software.


Propose changes to this simulator