GSR: Simulator - SimPEL

Basic Package Attributes
AttributeValue
Title SimPEL
Short Description SimPEL is short for Simulation-based Power Estimation for sequencing studies of Low-prevalence conditions.
Long Description SimPEL is short for Simulation-based Power Estimation for sequencing studies of Low-prevalence conditions. SimPEL addresses the need for power estimation in low-prevalence condition studies, taking into account their inherently small sample sizes and analytical procedures. SimPEL integrates customizable parameters to realistically model study design outcomes and provide applicable information towards further refinement of experimental procedure. SimPEL is implemented as a function of the established JAWAMix5 tool (Long et al., 2013)⁠, an HDF5-based Java implementation for association mapping.
Keywords genome-wide sequencing, power estimation, rare disease, adverse drug reactions,association analyses, genetic variant annotation
Version 1.0
Project Started 2017
Last Release 2 years, 1 month ago
Homepagehttps://github.com/precisionomics/SimPEL
Citations
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Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
Language
License
GSR Certification

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