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GSR: Simulator - SimSeq
| Attribute | Value |
|---|---|
| Title | SimSeq |
| Short Description | An illumina paired-end and mate-pair short read simulator. |
| Long Description | This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site a… |
| Project Started | 2012 |
| Homepage | https://github.com/jstjohn/SimSeq |
| Citations | |
| GSR Certification | ✔ Accessibility |
| Last evaluated | April 24, 2023 (873 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Sequencing Reads, |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | |
| Development | |
| Tested Platforms | |
| Language | |
| License | |
| GSR Certification | Accessibility, |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using SimSeq has been provided.
Please propose new citations if you are aware of publications that use this software.