GSR: Editing - simuPOP Simulator

You may request changes to this simulator by navigating to the Basic, Details, and Citations/Applications tabs. When you are finished, open the Submit tab. To return back to the simulator view, click simuPOP. Finally, please take note of the GSR simulator privacy policy.
simuPOP
simuPOP is a general-purpose individual-based forward-time population genetics simulation environment.
simuPOP is a general-purpose individual-based forward-time population genetics simulation environment. The core of simuPOP is a scripting language (Python) that provides a large number of objects and functions to manipulate populations, and a mechanism to evolve populations forward in time. Using this environment, users can create, manipulate and evolve populations interactively, or write a script and run it as a batch file. Owing to its flexible and extensible design, simuPOP can simulate large and complex evolutionary processes with ease.
1.1.7
07-24-2005
01-20-2016
http://simupop.sourceforge.net/

Attribute Tree Control

Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.

Every sub-attribute is selected
Not all sub-attributes are selected
  • Target
    • Type of Simulated Data
      • Genotype at Genetic Markers
      • Diploid DNA Sequence
      • Haploid DNA Sequence
      • RNA
      • Sex Chromosomes
      • Mitochondrial DNA
      • Protein Sequence
      • Sequencing Reads
      • Phenotype
    • Variations
      • Biallelic Marker
      • Multiallelic Marker
      • Single Nucleotide Variation
      • Amino acid variation
      • Microsatellite
      • Insertion and Deletion
      • CNV
      • Inversion and Rearrangement
      • Alternative Splicing
      • Missing Genotypes
      • Genotype or Sequencing Error
      • Other
  • Simulation Method
    • Standard Coalescent
    • Exact Coalescent
    • Machine Learning
    • Forward-time
    • Resample Existing Data
    • Phylogenetic
    • Gene dropping
    • Other
  • Input
    • Data Type
      • Allele Frequencies
      • Empirical
      • Ancestral Sequence
      • Saved simulation
      • Reference genome
      • Other
    • File format
      • Arlequin
      • CREATE
      • Fstat
      • GDA
      • Genepop
      • MIGRATE
      • MS
      • SAM or BAM
      • NEXUS
      • Phylip
      • STRUCTURE
      • XML
      • Tree Sequence
      • Program Specific
      • Other
  • Output
    • Data Type
      • Genotype or Sequence
      • Phenotypic Trait
      • Individual Relationship
      • Demographic
      • Mutation
      • Methylation
      • Gene Expression
      • Protein Expression
      • Linkage Disequilibrium
      • Diversity Measures
      • Fitness
      • Sequencing Reads
        • Illumina
        • Roche 454
        • SOLiD
        • IonTorrent
        • PacBio
        • Nanopore
        • Other
      • Other
    • File Format
      • Arlequin
      • Fasta or Fastq
      • Fstat
      • Genepop
      • Linkage
      • MIGRATE
      • MS
      • PED
      • Phylip
      • NEXUS
      • STRUCTURE
      • VCF
      • SAM or BAM
      • Tree Sequence
      • Program Specific
      • Other
    • Sample Type
      • Random or Independent
      • Sibpairs, Trios and Nuclear Families
      • Extended or Complete Pedigrees
      • Case-control
      • Longitudinal
      • Other
  • Phenotype
    • Trait Type
      • Binary or Qualitative
      • Quantitative
      • Multiple
    • Determinants
      • Single Genetic Marker
      • Multiple Genetic Markers
      • Sex-linked
      • Gene-Gene Interaction
      • Environmental Factors
      • Gene-Environment Interaction
  • Evolutionary Features
    • Demographic
      • Population Size Changes
        • Constant Size
        • Exponential Growth or Decline
        • Logistic Growth
        • Bottleneck
        • Carrying Capacity
        • User Defined
      • Gene Flow
        • Stepping Stone Models
        • Island Models
        • Continent-Island Models
        • Sex or Age-Specific Migration Rates
        • Influenced by Environmental Factors
        • Admixed Population
        • User-defined Matrix
        • Other
      • Spatiality
        • Discrete Models
        • Continuous Models
        • Landscape Factors
    • Life Cycle
      • Discrete Generation Model
      • Age structured
      • Overlapping Generation
      • User-Defined transition matrices
    • Mating System
      • Random Mating
      • Monogamous
      • Polygamous
      • Haplodiploid
      • Selfing
      • Age- or Stage-Specific
      • Assortative or Disassortative
      • Other
    • Fecundity
      • Constant Number
      • Randomly Distributed
      • Individually Determined
      • Influenced by Environment
      • Other
    • Natural Selection
      • Determinant
        • Single-locus
        • Multi-locus
        • Codon-based
        • Fitness of Offspring
        • Phenotypic Trait
        • Environmental Factors
      • Models
        • Directional Selection
        • Balancing Selection
        • Multi-locus models
        • Epistasis
        • Random Fitness Effects
        • Disruptive
        • Phenotype Threshold
        • Frequency-Dependent
        • Other
    • Recombination
      • Uniform
      • Varying Recombination Rates
      • Gene Conversion Allowed
    • Mutation Models
      • Two-allele Mutation Model
      • Markov DNA Evolution Models
      • k-Allele Model
      • Infinite-allele Model
      • Infinite-sites Model
      • Stepwise Mutation Model
      • Codon and Amino Acid Models
      • Indels and Others
      • Heterogeneity among Sites
      • Others
    • Events Allowed
      • Population Merge and Split
      • Varying Demographic Features
      • Population Events
      • Varying Genetic Features
      • Change of Mating Systems
      • Other
    • Other
      • Phenogenetic
      • Polygenic background
  • Interface
    • Command-line
    • Graphical User Interface
    • Integrated Development Environment
    • Script-based
    • Web-based
  • Development
    • Tested Platforms
      • Windows
      • Mac OS X
      • Linux and Unix
      • Solaris
      • Others
    • Language
      • C or C++
      • Java
      • R
      • Python
      • Perl
      • Visual Basic
      • Other
    • License
      • GNU Public License
      • BSD
      • Creative Commons
      • MIT
      • Other
  • GSR Certification
    • Accessibility
    • Documentation
    • Application
    • Support

Summary of Proposed Changes

Step 2: Review list of proposed attribute addition(s) and subtraction(s).

To Add

    To Remove

      Can't Find the Attribute You Are Looking For?

      If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab.

      You may add citations by pmid, add citations by direct entry, remove citations (using the recycling bin icon), and edit citations (using the rarely seen edit icon) that were originally entered by direct entry.

      Summary of Proposed Changes

      To Add

      To Remove

      Current Citations/Applications

      Antao T, Pérez-Figueroa A, Luikart G, Early detection of population declines: high power of genetic monitoring using effective population size estimators, Evolutionary Applications, 08-03-2010, http://dx.doi.org/10.1111/j.1752-4571.2010.00150.x,, Application
      Papetti C, Pujolar JM, Mezzavilla M, La Mesa M, Rock J, Zane L, Patarnell T, Population genetic structure and gene flow patterns between populations of the Antarctic icefish Chionodraco rastrospinosus, Journal of Biogeography, 02-06-2012, http://dx.doi.org/10.1111/j.1365-2699.2011.02682.x,, Application
      Moore CB, Wallace JR, Frase AT, Pendergrass SA, Ritchie MD, BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge, BMC Medical Genomics, 05-07-2013, http://www.biomedcentral.com/1755-8794/6/S2/S6,, Application
      Pérez-Figueroa A, Wallen RL, Antao T, Coombs JA, Schwartz ML, White PJ, Luikart G, Conserving genomic variability in large mammals: Effect of population fluctuations and variance in male reproductive success on variability in Yellowstone bison, Biological Conservation, 06-01-2012, http://dx.doi.org/10.1016/j.biocon.2012.02.022,, Application
      Pujolar JM, Bevacqua D, Capoccioni F, Ciccotti E, De Leo GA, Zane L, No apparent genetic bottleneck in the demographically declining European eel using molecular genetics and forward-time simulations, Conservation Genetics, 06-01-2011, http://dx.doi.org/10.1007/s10592-011-0188-y,, Application
      [Pubmed ID: 16020469], Peng B, Kimmel M, simuPOP: a forward-time population genetics simulation environment., Bioinformatics, 09-15-2005, https://www.ncbi.nlm.nih.gov/pubmed/?term=16020469,Primary Citation
      [Pubmed ID: 17151262], Peng B, Kimmel M, Simulations provide support for the common disease-common variant hypothesis., Genetics, 02-01-2007, https://www.ncbi.nlm.nih.gov/pubmed/?term=17151262,, Application
      [Pubmed ID: 17381243], Peng B, Amos CI, Kimmel M, Forward-time simulations of human populations with complex diseases., PLoS Genet, 03-23-2007, https://www.ncbi.nlm.nih.gov/pubmed/?term=17381243,, Application
      [Pubmed ID: 17694054], Norman PJ, Abi-Rached L, Gendzekhadze K, Korbel D, Gleimer M, Rowley D, Bruno D, Carrington CV, Chandanayingyong D, Chang YH, Crespí C, et al., Unusual selection on the KIR3DL1/S1 natural killer cell receptor in Africans., Nat Genet, 09-01-2007, https://www.ncbi.nlm.nih.gov/pubmed/?term=17694054,, Application
      [Pubmed ID: 18417488], Peng B, Amos CI, Forward-time simulations of non-random mating populations using simuPOP., Bioinformatics, 06-01-2008, https://www.ncbi.nlm.nih.gov/pubmed/?term=18417488,Primary Citation
      [Pubmed ID: 18928554], Stacey A, Sheffield NC, Crandall KA, Calculating expected DNA remnants from ancient founding events in human population genetics., BMC Genet, 10-17-2008, https://www.ncbi.nlm.nih.gov/pubmed/?term=18928554,, Application
      [Pubmed ID: 19365845], Gu X, Frankowski RF, Rosner GL, Relling M, Peng B, Amos CI, A modified forward multiple regression in high-density genome-wide association studies for complex traits., Genet Epidemiol, 09-01-2009, https://www.ncbi.nlm.nih.gov/pubmed/?term=19365845,, Application
      [Pubmed ID: 19415332], Wu CC, Shete S, Chen WV, Peng B, Lee AT, Ma J, Gregersen PK, Amos CI, Detection of disease-associated deletions in case-control studies using SNP genotypes with application to rheumatoid arthritis., Hum Genet, 08-01-2009, https://www.ncbi.nlm.nih.gov/pubmed/?term=19415332,, Application
      [Pubmed ID: 19837691], Gendzekhadze K, Norman PJ, Abi-Rached L, Graef T, Moesta AK, Layrisse Z, Parham P, Co-evolution of KIR2DL3 with HLA-C in a human population retaining minimal essential diversity of KIR and HLA class I ligands., Proc Natl Acad Sci U S A, 11-03-2009, https://www.ncbi.nlm.nih.gov/pubmed/?term=19837691,, Application
      [Pubmed ID: 20809983], Peng B, Amos CI, Forward-time simulation of realistic samples for genome-wide association studies., BMC Bioinformatics, 09-01-2010, https://www.ncbi.nlm.nih.gov/pubmed/?term=20809983,, Application
      [Pubmed ID: 20961408], Zheng J, Khil PP, Camerini-Otero RD, Przytycka TM, Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome., Genome Biol, 01-01-2010, https://www.ncbi.nlm.nih.gov/pubmed/?term=20961408,, Application
      [Pubmed ID: 21209280], Gleimer M, Wahl AR, Hickman HD, Abi-Rached L, Norman PJ, Guethlein LA, Hammond JA, Draghi M, Adams EJ, Juo S, Jalili R, et al., Although divergent in residues of the peptide binding site, conserved chimpanzee Patr-AL and polymorphic human HLA-A*02 have overlapping peptide-binding repertoires., J Immunol, 02-01-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=21209280,, Application
      [Pubmed ID: 21212684], Peng B, Liu X, Simulating sequences of the human genome with rare variants., Hum Hered, 01-01-2010, https://www.ncbi.nlm.nih.gov/pubmed/?term=21212684,, Application
      [Pubmed ID: 21472410], Odong TL, van Heerwaarden J, Jansen J, van Hintum TJ, van Eeuwijk FA, Determination of genetic structure of germplasm collections: are traditional hierarchical clustering methods appropriate for molecular marker data?, Theor Appl Genet, 07-01-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=21472410,, Application
      [Pubmed ID: 21486439], Bortolotto E, Bucklin A, Mezzavilla M, Zane L, Patarnello T, Gone with the currents: lack of genetic differentiation at the circum-continental scale in the Antarctic krill Euphausia superba., BMC Genet, 04-12-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=21486439,, Application
      [Pubmed ID: 21729064], Arnqvist G, Assortative mating by fitness and sexually antagonistic genetic variation., Evolution, 07-01-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=21729064,, Application
      [Pubmed ID: 22006673], Palin K, Campbell H, Wright AF, Wilson JF, Durbin R, Identity-by-descent-based phasing and imputation in founder populations using graphical models., Genet Epidemiol, 12-01-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=22006673,, Application
      [Pubmed ID: 22468169], Swartz MD, Peng B, Reyes-Gibby C, Shete S, Using Ascertainment for Targeted Resequencing to Increase Power to Identify Causal Variants., Stat Interface, 01-01-2011, https://www.ncbi.nlm.nih.gov/pubmed/?term=22468169,, Application
      [Pubmed ID: 22496634], Wang Y, Gjuvsland AB, Vik JO, Smith NP, Hunter PJ, Omholt SW, Parameters in dynamic models of complex traits are containers of missing heritability., PLoS Comput Biol, 01-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22496634,, Application
      [Pubmed ID: 22519785], Singhal S, Moritz C, Strong selection against hybrids maintains a narrow contact zone between morphologically cryptic lineages in a rainforest lizard., Evolution, 05-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22519785,, Application
      [Pubmed ID: 22698142], Pinelli M, Scala G, Amato R, Cocozza S, Miele G, Simulating gene-gene and gene-environment interactions in complex diseases: Gene-Environment iNteraction Simulator 2., BMC Bioinformatics, 06-14-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22698142,, Application
      [Pubmed ID: 22843499], Boraska V, Jerončić A, Colonna V, Southam L, Nyholt DR, Rayner NW, Perry JR, Toniolo D, Albrecht E, Ang W, Bandinelli S, et al., Genome-wide meta-analysis of common variant differences between men and women., Hum Mol Genet, 11-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22843499,, Application
      [Pubmed ID: 22865616], Cheung YH, Wang G, Leal SM, Wang S, A fast and noise-resilient approach to detect rare-variant associations with deep sequencing data for complex disorders., Genet Epidemiol, 11-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22865616,, Application
      [Pubmed ID: 22946818], Yoshizawa M, Ashida G, Jeffery WR, Parental genetic effects in a cavefish adaptive behavior explain disparity between nuclear and mitochondrial DNA., Evolution, 09-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=22946818,, Application
      [Pubmed ID: 23042948], Niederer SA, Land S, Omholt SW, Smith NP, Interpreting genetic effects through models of cardiac electromechanics., Am J Physiol Heart Circ Physiol, 12-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=23042948,, Application
      [Pubmed ID: 23104079], Roux C, Pauwels M, Ruggiero MV, Charlesworth D, Castric V, Vekemans X, Recent and ancient signature of balancing selection around the S-locus in Arabidopsis halleri and A. lyrata., Mol Biol Evol, 02-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23104079,, Application
      [Pubmed ID: 23161487], Xu Y, Wu Y, Song C, Zhang H, Simulating realistic genomic data with rare variants., Genet Epidemiol, 02-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23161487,, Application
      [Pubmed ID: 23307896], Fariello MI, Boitard S, Naya H, SanCristobal M, Servin B, Detecting signatures of selection through haplotype differentiation among hierarchically structured populations., Genetics, 03-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23307896,, Application
      [Pubmed ID: 23326209], Vasemägi A, Nilsson J, McGinnity P, Cross T, O'Reilly P, Glebe B, Peng B, Berg PR, Primmer CR, Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon., Comp Funct Genomics, 01-01-2012, https://www.ncbi.nlm.nih.gov/pubmed/?term=23326209,, Application
      [Pubmed ID: 23461327], Pritchard VL, Edmands S, The genomic trajectory of hybrid swarms: outcomes of repeated crosses between populations of Tigriopus californicus., Evolution, 03-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23461327,, Application
      [Pubmed ID: 23860326], Abdalla S, Al-Hadeethi Y, Genes alternations with exposure time of environmental factors., Gene, 10-10-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23860326,, Application
      [Pubmed ID: 23906727], De Maio N, Schlötterer C, Kosiol C, Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models., Mol Biol Evol, 10-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23906727,, Application
      [Pubmed ID: 23946335], Li B, Kimmel M, Factors influencing ascertainment bias of microsatellite allele sizes: impact on estimates of mutation rates., Genetics, 10-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=23946335,, Application
      [Pubmed ID: 24071997], Jiang PP, Corbett-Detig RB, Hartl DL, Lozovsky ER, Accessible mutational trajectories for the evolution of pyrimethamine resistance in the malaria parasite Plasmodium vivax., J Mol Evol, 09-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=24071997,, Application
      [Pubmed ID: 24131797], Hoban SM, Mezzavilla M, Gaggiotti OE, Benazzo A, van Oosterhout C, Bertorelle G, High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study., BMC Bioinformatics, 10-16-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=24131797,, Application
      [Pubmed ID: 24246292], Sim A, Tsagkrasoulis D, Montana G, Random forests on distance matrices for imaging genetics studies., Stat Appl Genet Mol Biol, 12-01-2013, https://www.ncbi.nlm.nih.gov/pubmed/?term=24246292,, Application
      [Pubmed ID: 24533858], Yang P, Wu M, Guo J, Kwoh CK, Przytycka TM, Zheng J, LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms., BMC Bioinformatics, 02-17-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24533858,, Application
      [Pubmed ID: 24586325], Song Y, Lan Z, Kohn MH, Mitochondrial DNA phylogeography of the norway rat., PLoS One, 01-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24586325,, Application
      [Pubmed ID: 24611912], Waples RS, Antao T, Intermittent breeding and constraints on litter size: consequences for effective population size per generation (Ne ) and per reproductive cycle (Nb )., Evolution, 06-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24611912,, Application
      [Pubmed ID: 24611968], de Villemereuil P, Frichot É, Bazin É, François O, Gaggiotti OE, Genome scan methods against more complex models: when and how much should we trust them?, Mol Ecol, 04-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24611968,, Application
      [Pubmed ID: 24688859], Kamvar ZN, Tabima JF, Grünwald NJ, Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction., PeerJ, 01-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24688859,, Application
      [Pubmed ID: 24717176], Waples RS, Antao T, Luikart G, Effects of Overlapping Generations on Linkage Disequilibrium Estimates of Effective Population Size., Genetics, 04-08-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24717176,, Application
      [Pubmed ID: 24830675], Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF, Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans., Mol Biol Evol, 09-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24830675,, Application
      [Pubmed ID: 24870040], Arnqvist G, Vellnow N, Rowe L, The effect of epistasis on sexually antagonistic genetic variation., Proc Biol Sci, 07-22-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24870040,, Application
      [Pubmed ID: 24899666], Duforet-Frebourg N, Bazin E, Blum MG, Genome scans for detecting footprints of local adaptation using a Bayesian factor model., Mol Biol Evol, 09-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=24899666,, Application
      [Pubmed ID: 25154109], Rasić G, Endersby NM, Williams C, Hoffmann AA, Using Wolbachia-based release for suppression of Aedes mosquitoes: insights from genetic data and population simulations., Ecol Appl, 07-01-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=25154109,, Application
      [Pubmed ID: 25262650], Foll M, Gaggiotti OE, Daub JT, Vatsiou A, Excoffier L, Widespread signals of convergent adaptation to high altitude in Asia and america., Am J Hum Genet, 10-02-2014, https://www.ncbi.nlm.nih.gov/pubmed/?term=25262650,, Application
      [Pubmed ID: 25435155], Mezzavilla M, Geppert M, Tyler-Smith C, Roewer L, Xue Y, Insights into the origin of rare haplogroup C3* Y chromosomes in South America from high-density autosomal SNP genotyping., Forensic Sci Int Genet, 03-01-2015, https://www.ncbi.nlm.nih.gov/pubmed/?term=25435155,, Application
      [Pubmed ID: 25848046], Polley S, Louzada S, Forni D, Sironi M, Balaskas T, Hains DS, Yang F, Hollox EJ, Evolution of the rapidly mutating human salivary agglutinin gene (DMBT1) and population subsistence strategy., Proc Natl Acad Sci U S A, 04-21-2015, https://www.ncbi.nlm.nih.gov/pubmed/?term=25848046,, Application
      [Pubmed ID: 25849855], Terhorst J, Schlötterer C, Song YS, Multi-locus analysis of genomic time series data from experimental evolution., PLoS Genet, 04-01-2015, https://www.ncbi.nlm.nih.gov/pubmed/?term=25849855,, Application
      [Pubmed ID: 25937445], Ayub Q, Mezzavilla M, Pagani L, Haber M, Mohyuddin A, Khaliq S, Mehdi SQ, Tyler-Smith C, The Kalash genetic isolate: ancient divergence, drift, and selection., Am J Hum Genet, 05-07-2015, https://www.ncbi.nlm.nih.gov/pubmed/?term=25937445,, Application
      [Pubmed ID: 26715629], Duforet-Frebourg N, Luu K, Laval G, Bazin E, Blum MG, Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data., Mol Biol Evol, 04-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=26715629,, Application
      [Pubmed ID: 26808374], Ogbunugafor CB, Wylie CS, Diakite I, Weinreich DM, Hartl DL, Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance., PLoS Comput Biol, 01-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=26808374,, Application
      [Pubmed ID: 26883865], Hackinger S, Kraaijenbrink T, Xue Y, Mezzavilla M, Asan, van Driem G, Jobling MA, de Knijff P, Tyler-Smith C, Ayub Q, Wide distribution and altitude correlation of an archaic high-altitude-adaptive EPAS1 haplotype in the Himalayas., Hum Genet, 04-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=26883865,, Application
      [Pubmed ID: 27099711], Picq S, McMillan WO, Puebla O, Population genomics of local adaptation versus speciation in coral reef fishes (Hypoplectrus spp, Serranidae)., Ecol Evol, 04-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=27099711,, Application
      [Pubmed ID: 27138342], Risso DS, Mezzavilla M, Pagani L, Robino A, Morini G, Tofanelli S, Carrai M, Campa D, Barale R, Caradonna F, Gasparini P, et al., Global diversity in the TAS2R38 bitter taste receptor: revisiting a classic evolutionary PROPosal., Sci Rep, 05-03-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=27138342,, Application
      [Pubmed ID: 27392065], Brousseau L, Postolache D, Lascoux M, Drouzas AD, Källman T, Leonarduzzi C, Liepelt S, Piotti A, Popescu F, Roschanski AM, Zhelev P, et al., Local Adaptation in European Firs Assessed through Extensive Sampling across Altitudinal Gradients in Southern Europe., PLoS One, 01-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=27392065,, Application
      [Pubmed ID: 27547310], Calboli FC, Byström P, Merilä J, A test for within-lake niche differentiation in the nine-spined sticklebacks (Pungitius pungitius)., Ecol Evol, 07-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=27547310,, Application
      [Pubmed ID: 27606009], Pritchard VL, Erkinaro J, Kent MP, Niemelä E, Orell P, Lien S, Primmer CR, Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees., Evol Appl, 09-01-2016, https://www.ncbi.nlm.nih.gov/pubmed/?term=27606009,, Application
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      Please inform the GSR team here if you would like to see an attribute added to the attribute tree (or any other changes to the simulator description system as it exists).