GSR: Simulator - SimuSCoP
Attribute | Value |
---|---|
Title | SimuSCoP |
Short Description | reliably simulate Illumina sequencing data based on position and context dependent profiles |
Long Description | a novel tool to reliably Simulate Illumina Sequencing data based on position and Context dependent Profiles |
Version | 1.0 |
Project Started | 2019 |
Last Release | 4 years, 11 months ago |
Homepage | https://github.com/qasimyu/simuscop |
Citations | Yu Z, Du F, Ban R, Zhang Y, SimuSCoP: reliably simulate Illumina sequencing data based on position and context dependent profiles., BMC Bioinformatics, 07-23-2020 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 09-30-2021 (926 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Sequencing Reads, |
Variations | Biallelic Marker, Genotype or Sequencing Error, |
Simulation Method | Resample Existing Data, |
Input | |
Data Type | |
File format | |
Output | |
Data Type | |
Sequencing Reads | Illumina, |
File Format | Fasta or Fastq, |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | C or C++, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SimuSCoP has been provided.
Please propose new citations if you are aware of publications that use this software.