GSR: Simulator - SimuSCoP

AttributeValue
Title SimuSCoP
Short Description reliably simulate Illumina sequencing data based on position and context dependent profiles
Long Description a novel tool to reliably Simulate Illumina Sequencing data based on position and Context dependent Profiles
Version 1.0
Project Started 2019
Last Release 4 years, 11 months ago
Homepagehttps://github.com/qasimyu/simuscop
Citations Yu Z, Du F, Ban R, Zhang Y, SimuSCoP: reliably simulate Illumina sequencing data based on position and context dependent profiles., BMC Bioinformatics, 07-23-2020 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
✔ Support

Last evaluated09-30-2021 (926 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
VariationsBiallelic Marker, Genotype or Sequencing Error,
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data Type
Sequencing ReadsIllumina,
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguageC or C++,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation, Support,

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using SimuSCoP has been provided.

Please propose new citations if you are aware of publications that use this software.


Propose changes to this simulator