GSR: Simulator - SimuSCoP

Basic Package Attributes
AttributeValue
Title SimuSCoP
Short Description reliably simulate Illumina sequencing data based on position and context dependent profiles
Long Description a novel tool to reliably Simulate Illumina Sequencing data based on position and Context dependent Profiles
Version 1.0
Project Started 2019
Last Release 2 years, 4 months ago
Homepagehttps://github.com/qasimyu/simuscop
Citations Yu Z, Du F, Ban R, Zhang Y, SimuSCoP: reliably simulate Illumina sequencing data based on position and context dependent profiles., BMC Bioinformatics, 07-23-2020 [ Abstract, cited in PMC ]
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
VariationsBiallelic Marker, Genotype or Sequencing Error,
Simulation MethodResample Existing Data,
Input
Data Type
File format
Output
Data Type
Sequencing ReadsIllumina,
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguageC or C++,
LicenseGNU Public License,
GSR Certification

No example publication using SimuSCoP has been provided.

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