GSR: Simulator - SInC
|Short Description||An accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data|
|Long Description||An open-source variant simulator and read generator capable of simulating all the three common types of biological variants taking into account a distribution of base quality score from a most commonly used next-generation sequencing instrument from Illumina. SInC is capable of generating single- and paired-end reads with user-defined insert size and with high efficiency compared to the other existing tools. SInC, due to its multi-threaded capability during read generation, has a low time footprint. SInC is currently optimised to work in limited infrastructure setup and can efficiently exploit the commonly used quad-core desktop architecture to simulate short sequence reads with deep coverage for large genomes.|
|Last Release||6 years, 8 months ago|
|Citations||Pattnaik S, Gupta S, Rao AA, Panda B, SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data., BMC Bioinformatics, 02-05-2014 [ Abstract, cited in PMC ]|
|Last evaluated||08-09-2018 (986 days ago)|
|Author verification||The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.|
|Type of Simulated Data||Sequencing Reads,|
|Variations||Single Nucleotide Variation, Insertion and Deletion, CNV,|
|File Format||Fasta or Fastq,|
|Population Size Changes|
|Language||C or C++,|
|GSR Certification||Accessibility, Support,|
No example publication using SInC has been provided.
Please propose new citations if you are aware of publications that use this software.