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GSR: Simulator - SISSI
| Attribute | Value |
|---|---|
| Title | SISSI |
| Short Description | A software tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. |
| Long Description | Simulating Site-Specific Interactions (SISSI) that simulatesevolution of a nucleotide sequence along a phylogenetic tree incorporating user defined site-specific interactions. Furthermore, our method allows to simulate more complex interactions among nucleotide and other character based sequences |
| Version | 1.0 |
| Project Started | 2005 |
| Last Release | 19 years, 9 months ago |
| Homepage | http://www.cibiv.at/software/sissi/ |
| Citations | Gesell T, von Haeseler A, In silico sequence evolution with site-specific interactions along phylogenetic trees., Bioinformatics, March 15, 2006 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | Oct. 1, 2020 (1808 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Diploid DNA Sequence, Haploid DNA Sequence, RNA, |
| Variations | Single Nucleotide Variation, Insertion and Deletion, |
| Simulation Method | Phylogenetic, |
| Input | |
| Data Type | Ancestral Sequence, |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | Fasta or Fastq, Phylip, Other (Clustal), |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | Codon and Amino Acid Models, Indels and Others, |
| Events Allowed | |
| Other | |
| Interface | Command-line, |
| Development | |
| Tested Platforms | Windows, Mac OS X, Linux and Unix, |
| Language | C or C++, |
| License | GNU Public License, |
| GSR Certification | Accessibility, Documentation, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SISSI has been provided.
Please propose new citations if you are aware of publications that use this software.