GSR: Simulator - SISSI

Basic Package Attributes
AttributeValue
Title SISSI
Short Description A software tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices.
Long Description Simulating Site-Specific Interactions (SISSI) that simulatesevolution of a nucleotide sequence along a phylogenetic tree incorporating user defined site-specific interactions. Furthermore, our method allows to simulate more complex interactions among nucleotide and other character based sequences
Version 1.0
Project Started 2005
Last Release 14 years, 9 months ago
Homepagehttp://www.cibiv.at/software/sissi/
Citations Gesell T, von Haeseler A, In silico sequence evolution with site-specific interactions along phylogenetic trees., Bioinformatics, 03-15-2006 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated10-01-2020 (16 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataDiploid DNA Sequence, Haploid DNA Sequence, RNA,
VariationsSingle Nucleotide Variation, Insertion and Deletion,
Simulation MethodPhylogenetic,
Input
Data TypeAncestral Sequence,
File format
Output
Data Type
Sequencing Reads
File FormatFasta or Fastq, Phylip, Other (Clustal),
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation ModelsCodon and Amino Acid Models, Indels and Others,
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguageC or C++,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation,

No example publication using SISSI has been provided.

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