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GSR: Simulator - skeleSim
| Attribute | Value |
|---|---|
| Title | skeleSim |
| Short Description | an extensible, general framework for population genetic simulation in R |
| Long Description | skeleSim is a tool to guide users in choosing appropriate simulations, setting parameters, calculating summary genetic statistics, and organizing data output, all within the R environment. skeleSim is designed to be an extensible environment that can 'wrap' around any simulation software to increase its accessibility and use. |
| Version | 1 |
| Last Release | 8 years, 10 months ago |
| Homepage | https://github.com/christianparobek/skeleSim |
| Citations | Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE, skelesim: an extensible, general framework for population genetic simulation in R., Mol Ecol Resour, Jan. 1, 2017 [ Abstract, cited in PMC ] |
| GSR Certification | ✔ Accessibility |
| Last evaluated | April 24, 2023 (726 days ago) |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Genotype at Genetic Markers, |
| Variations | |
| Simulation Method | Standard Coalescent, Forward-time, |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | |
| Sequencing Reads | |
| File Format | |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Script-based, |
| Development | |
| Tested Platforms | |
| Language | R, |
| License | |
| GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using skeleSim has been provided.
Please propose new citations if you are aware of publications that use this software.