Refoyo-Martínez, A., da Fonseca, R.R., Halldórsdóttir, K., Árnason, E., Mailund, T., & Racimo, F.,
Identifying loci under positive selection in complex population histories,
bioRxiv,
10-25-2018,
https://doi.org/10.1101/453092,, Application
Petr, M., Pääbo, S., Kelso, J., & Vernot, B.,
The limits of long-term selection against Neandertal introgression,
bioRxiv,
07-04-2018,
https://doi.org/10.1101/362566,, Application
Robinson, J.A., Brown, C., Kim, B.Y., Lohmueller, K.E., & Wayne, R.K.,
Purging of Strongly Deleterious Mutations Explains Long-Term Persistence and Absence of Inbreeding Depression in Island Foxes,
Current Biology,
10-25-2018,
https://doi.org/10.1016/j.cub.2018.08.066,, Application
Cocca, M., Pybus, M., Palamara, P.F., et al.,
Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity,
bioRxiv,
10-12-2015,
https://doi.org/10.1101/022947,, Application
Peyregne, S., Boyle, M.J., Dannemann, M., & Prufer, K.,
Detecting ancient positive selection in humans using extended lineage sorting,
bioRxiv,
04-19-2017,
https://doi.org/10.1101/092999,, Application
Cassa, C.A., Weghorn, D., Balick, D.J., et al.,
Estimating the selective effect of heterozygous protein truncating variants from human exome data,
bioRxiv,
09-16-2016,
https://doi.org/10.1101/075523,, Application
Aeschbacher, S., Packard Selby, J., Willis, J.H., & Coop, G.,
Population-genomic inference of the strength and timing of selection against gene flow,
bioRxiv,
06-07-2017,
https://doi.org/10.1101/072736,, Application
Cahill, J.A., Heintzman, P.D., Harris, K., Teasdale, M., Kapp, J., Soares, A.E.R., Stirling, I., Bradley, D., Edwards, C.J., Kisleika, A.A., Malev, A.V., Monaghan, N., Green, R.E., Shapiro, B.,
Genomic evidence of globally widespread admixture from polar bears into brown bears during the last ice age,
bioRxiv,
06-25-2017,
https://doi.org/10.1101/154773,, Application
Schiffels, S., Mustonen, V., & Lässig, M.,
The asexual genome of Drosophila,
bioRxiv,
11-29-2017,
https://doi.org/10.1101/226670,, Application
Lange, J.D., & Pool, J.E.,
Impacts of recurrent hitchhiking on divergence and demographic inference in Drosophila,
bioRxiv,
07-11-2018,
http://dx.doi.org/10.1101/187633,, Application
Matz, M.V., Treml, E.A., Aglyamova, G.V., et al.,
Potential for rapid genetic adaptation to warming in a Great Barrier Reef coral,
bioRxiv,
06-18-2017,
http://dx.doi.org/10.1101/114173,, Application
Laenen, B., Tedder, A., Nowak, M.D., et al.,
Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina,
bioRxiv,
05-04-2017,
http://dx.doi.org/10.1101/127209,, Application
Harris, A.M., & DeGiorgio, M.,
Identifying and classifying shared selective sweeps from multilocus data,
bioRxiv,
10-17-2018,
https://doi.org/10.1101/446005,, Application
de Koning, A.J., & De Sanctis, B.D.,
The Rate of Observable Molecular Evolution When Mutation May Not Be Weak,
bioRxiv,
08-28-2018,
https://doi.org/10.1101/259507,, Application
Kiwoong, N.A.M., Nhim, S., Robin, S., Bretaudeau, A., & Negre, N.,
Genomic differentiation is initiated without physical linkage among targets of divergent selection in Fall armyworms,
bioRxiv,
10-25-2018,
https://doi.org/10.1101/452870,, Application
Champer, J., Zhao, J., Champer, S., Liu, J., Messer, P.W.,
Population dynamics of underdominance gene drive systems in continuous space,
bioRxiv,
10-22-2018,
https://doi.org/10.1101/449355,, Application
Cheng, X., & DeGiorgio, M.,
Detection of shared balancing selection in the absence of trans-species polymorphism,
bioRxiv,
09-22-2018,
https://doi.org/10.1101/320390,, Application
Gazal, S., Loh, P.R., Finucane, H., Ganna, A., Schoech, A., Sunyaev, S., & Price, A.,
Low-frequency variant functional architectures reveal strength of negative selection across coding and non-coding annotations,
bioRxiv,
04-09-2018,
https://doi.org/10.1101/297572,, Application
Harris, R., Sackman, A., & Jensen, J.D.,
On the unfounded enthusiasm for soft selective sweeps II: examining recent evidence from humans, flies, and viruses,
bioRxiv,
10-19-2018,
https://doi.org/10.1101/443051,, Application
Hämälä, T., & Savolainen, O.,
Local adaptation under gene flow: Recombination, conditional neutrality and genetic trade-offs shape genomic patterns in Arabidopsis lyrata,
bioRxiv,
07-23-2018,
https://doi.org/10.1101/374900,, Application
Li, H., & Ralph, P.,
Local PCA shows how the effect of population structure differs along the genome,
bioRxiv,
09-19-2018,
https://doi.org/10.1101/070615,, Application
Mooney, J., Huber, C., Sul, J.H., Marsden, C., Zhang, Z., Sabatti, C., Ruiz-Linares, A., Bedoy, G., Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes, Freimer, N., & Lohmueller, K. E.,
Understanding the Hidden Complexity of Latin American Population Isolates,
bioRxiv,
06-06-2018,
https://doi.org/10.1101/340158,, Application
Parada, J.L.C., & Charlesworth, B.,
The effects on neutral variability of recurrent selective sweeps and background selection,
bioRxiv,
06-29-2018,
https://doi.org/10.1101/358309,, Application
Rougemont, Q., Carrier, A., Leluyer, J., Ferchaud, A.-L., Farrell, J., Hatin, D., Brodeur, P., & Bernatchez, L.,
Combining population genomics and forward simulations to investigate stocking impacts: A case study of Muskellunge (Esox masquinongy) from the St. Lawrence River basin,
bioRxiv,
07-06-2018,
https://doi.org/10.1101/363283,, Application
[Pubmed ID: 23341416],
Kousathanas A, Keightley PD,
A comparison of models to infer the distribution of fitness effects of new mutations.,
Genetics,
04-01-2013,
https://doi.org/10.1101/022947,, Application
[Pubmed ID: 23650353],
Messer PW, Petrov DA,
Frequent adaptation and the McDonald-Kreitman test.,
Proc Natl Acad Sci U S A,
05-21-2013,
https://www.ncbi.nlm.nih.gov/pubmed/?term=23650353,, Application
[Pubmed ID: 23709637],
Messer PW,
SLiM: simulating evolution with selection and linkage.,
Genetics,
08-01-2013,
https://www.ncbi.nlm.nih.gov/pubmed/?term=23709637,Primary Citation
[Pubmed ID: 24619126],
Enard D, Messer PW, Petrov DA,
Genome-wide signals of positive selection in human evolution.,
Genome Res,
06-01-2014,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24619126,, Application
[Pubmed ID: 24830675],
Veeramah KR, Gutenkunst RN, Woerner AE, Watkins JC, Hammer MF,
Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans.,
Mol Biol Evol,
09-01-2014,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24830675,, Application
[Pubmed ID: 24968283],
Comeron JM,
Background selection as baseline for nucleotide variation across the Drosophila genome.,
PLoS Genet,
06-01-2014,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24968283,, Application
[Pubmed ID: 25375361],
Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA,
Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila.,
PLoS Genet,
11-01-2014,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25375361,, Application
[Pubmed ID: 25552275],
Arunkumar R, Ness RW, Wright SI, Barrett SC,
The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations.,
Genetics,
03-01-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25552275,, Application
[Pubmed ID: 25685891],
Hussin JG, Hodgkinson A, Idaghdour Y, Grenier JC, Goulet JP, Gbeha E, Hip-Ki E, Awadalla P,
Recombination affects accumulation of damaging and disease-associated mutations in human populations.,
Nat Genet,
04-01-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25685891,, Application
[Pubmed ID: 25691747],
Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, et al.,
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.,
Proc Natl Acad Sci U S A,
03-03-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25691747,, Application
[Pubmed ID: 25827466],
Bianco E, Soto HW, Vargas L, Pérez-Enciso M,
The chimerical genome of Isla del Coco feral pigs (Costa Rica), an isolated population since 1793 but with remarkable levels of diversity.,
Mol Ecol,
05-01-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25827466,, Application
[Pubmed ID: 25941393],
Assaf ZJ, Petrov DA, Blundell JR,
Obstruction of adaptation in diploids by recessive, strongly deleterious alleles.,
Proc Natl Acad Sci U S A,
05-19-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=25941393,, Application
[Pubmed ID: 26394805],
Ewing GB, Jensen JD,
The consequences of not accounting for background selection in demographic inference.,
Mol Ecol,
01-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26394805,, Application
[Pubmed ID: 26482794],
Caballero A, Tenesa A, Keightley PD,
The Nature of Genetic Variation for Complex Traits Revealed by GWAS and Regional Heritability Mapping Analyses.,
Genetics,
12-01-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26482794,, Application
[Pubmed ID: 26500260],
Mafessoni F, Lachmann M,
Selective Strolls: Fixation and Extinction in Diploids Are Slower for Weakly Selected Mutations Than for Neutral Ones.,
Genetics,
12-01-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26500260,, Application
[Pubmed ID: 26590212],
Schrider DR, Kern AD,
Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain.,
Genome Biol Evol,
11-19-2015,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26590212,, Application
[Pubmed ID: 26596347],
Racimo F,
Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation.,
Genetics,
02-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26596347,, Application
[Pubmed ID: 26752180],
Galtier N,
Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis.,
PLoS Genet,
01-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26752180,, Application
[Pubmed ID: 26831942],
de Filippo C, Key FM, Ghirotto S, Benazzo A, Meneu JR, Weihmann A, Parra G, Green ED, Andrés AM,
Recent Selection Changes in Human Genes under Long-Term Balancing Selection.,
Mol Biol Evol,
06-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=26831942,, Application
[Pubmed ID: 27038113],
Harris K, Nielsen R,
The Genetic Cost of Neanderthal Introgression.,
Genetics,
06-01-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27038113,, Application
[Pubmed ID: 27187613],
Enard D, Cai L, Gwennap C, Petrov DA,
Viruses are a dominant driver of protein adaptation in mammals.,
Elife,
05-17-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27187613,, Application
[Pubmed ID: 27255481],
Chen CY, Hung LY, Wu CS, Chuang TJ,
Purifying selection shapes the coincident SNP distribution of primate coding sequences.,
Sci Rep,
06-03-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27255481,, Application
[Pubmed ID: 27702775],
Haller BC, Messer PW,
SLiM 2: Flexible, Interactive Forward Genetic Simulations.,
Mol Biol Evol,
01-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27702775,Primary Citation
[Pubmed ID: 27756828],
Racimo F, Marnetto D, Huerta-Sánchez E,
Signatures of Archaic Adaptive Introgression in Present-Day Human Populations.,
Mol Biol Evol,
02-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27756828,, Application
[Pubmed ID: 27845766],
Lindo J, Huerta-Sánchez E, Nakagome S, Rasmussen M, Petzelt B, Mitchell J, Cybulski JS, Willerslev E, DeGiorgio M, Malhi RS,
A time transect of exomes from a Native American population before and after European contact.,
Nat Commun,
11-15-2016,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27845766,, Application
[Pubmed ID: 27903613],
Pedersen CT, Lohmueller KE, Grarup N, Bjerregaard P, Hansen T, Siegismund HR, Moltke I, Albrechtsen A,
The Effect of an Extreme and Prolonged Population Bottleneck on Patterns of Deleterious Variation: Insights from the Greenlandic Inuit.,
Genetics,
02-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=27903613,, Application
[Pubmed ID: 28007980],
Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sánchez E, Nielsen R,
Archaic Adaptive Introgression in TBX15/WARS2.,
Mol Biol Evol,
03-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28007980,, Application
[Pubmed ID: 28087781],
Liu Q, Zhou Y, Morrell PL, Gaut BS,
Deleterious Variants in Asian Rice and the Potential Cost of Domestication.,
Mol Biol Evol,
04-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28087781,, Application
[Pubmed ID: 28100590],
Kardos M, Qvarnström A, Ellegren H,
Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in <i>Ficedula</i> Flycatcher Genome Sequences.,
Genetics,
03-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28100590,, Application
[Pubmed ID: 28137852],
Nam K, Munch K, Mailund T, Nater A, Greminger MP, Krützen M, Marquès-Bonet T, Schierup MH,
Evidence that the rate of strong selective sweeps increases with population size in the great apes.,
Proc Natl Acad Sci U S A,
02-14-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28137852,, Application
[Pubmed ID: 28249985],
Kim BY, Huber CD, Lohmueller KE,
Inference of the Distribution of Selection Coefficients for New Nonsynonymous Mutations Using Large Samples.,
Genetics,
05-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28249985,, Application
[Pubmed ID: 28253255],
Rogers RL, Slatkin M,
Excess of genomic defects in a woolly mammoth on Wrangel island.,
PLoS Genet,
03-02-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28253255,, Application
[Pubmed ID: 28275143],
Bay RA, Ruegg K,
Genomic islands of divergence or opportunities for introgression?,
Proc Biol Sci,
03-15-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28275143,, Application
[Pubmed ID: 28341700],
Haller BC, Messer PW,
asymptoticMK: A Web-Based Tool for the Asymptotic McDonald-Kreitman Test.,
G3 (Bethesda),
05-05-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28341700,, Application
[Pubmed ID: 28400513],
Huber CD, Kim BY, Marsden CD, Lohmueller KE,
Determining the factors driving selective effects of new nonsynonymous mutations.,
Proc Natl Acad Sci U S A,
04-25-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28400513,, Application
[Pubmed ID: 28450643],
Librado P, Gamba C, Gaunitz C, Der Sarkissian C, Pruvost M, Albrechtsen A, Fages A, Khan N, Schubert M, Jagannathan V, et al.,
Ancient genomic changes associated with domestication of the horse.,
Science,
04-28-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28450643,, Application
[Pubmed ID: 28473589],
Sohail M, Vakhrusheva OA, Sul JH, Pulit SL, Francioli LC, Genome of the Netherlands Consortium., Alzheimer’s Disease Neuroimaging Initiative., van den Berg LH, Veldink JH, de Bakker PIW, et al.,
Negative selection in humans and fruit flies involves synergistic epistasis.,
Science,
05-05-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28473589,, Application
[Pubmed ID: 28751421],
Booker TR, Ness RW, Keightley PD,
The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data.,
Genetics,
09-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28751421,, Application
[Pubmed ID: 28892061],
Gazal S, Finucane HK, Furlotte NA, Loh PR, Palamara PF, Liu X, Schoech A, Bulik-Sullivan B, Neale BM, Gusev A, et al.,
Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection.,
Nat Genet,
10-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28892061,, Application
[Pubmed ID: 28957509],
Xu D, Pavlidis P, Taskent RO, Alachiotis N, Flanagan C, DeGiorgio M, Blekhman R, Ruhl S, Gokcumen O,
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation.,
Mol Biol Evol,
10-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28957509,, Application
[Pubmed ID: 28981714],
Siewert KM, Voight BF,
Detecting Long-Term Balancing Selection Using Allele Frequency Correlation.,
Mol Biol Evol,
11-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28981714,, Application
[Pubmed ID: 28982795],
Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T, Ko A, Rasmussen S, Dupanloup I, Nigst PR, Bosch MD, et al.,
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.,
Science,
11-03-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28982795,, Application
[Pubmed ID: 29026132],
Eichstaedt CA, Pagani L, Antao T, Inchley CE, Cardona A, Mörseburg A, Clemente FJ, Sluckin TJ, Metspalu E, Mitt M, et al.,
Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations.,
Sci Rep,
10-12-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29026132,, Application
[Pubmed ID: 29029271],
Morgan AP, Pardo-Manuel de Villena F,
Sequence and Structural Diversity of Mouse Y Chromosomes.,
Mol Biol Evol,
12-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29029271,, Application
[Pubmed ID: 29069452],
Kosheleva K, Desai MM,
Recombination Alters the Dynamics of Adaptation on Standing Variation in Laboratory Yeast Populations.,
Mol Biol Evol,
01-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29069452,, Application
[Pubmed ID: 29109230],
Comeron JM,
Background selection as null hypothesis in population genomics: insights and challenges from <i>Drosophila</i> studies.,
Philos Trans R Soc Lond B Biol Sci,
12-19-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29109230,, Application
[Pubmed ID: 29113018],
Cheng X, Xu C, DeGiorgio M,
Fast and robust detection of ancestral selective sweeps.,
Mol Ecol,
12-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29113018,, Application
[Pubmed ID: 29285971],
Antelope CX, Marnetto D, Casey F, Huerta-Sanchez E,
Leveraging Multiple Populations across Time Helps Define Accurate Models of Human Evolution: A Reanalysis of the Lactase Persistence Adaptation.,
Hum Biol,
01-01-2017,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29285971,, Application
[Pubmed ID: 29459708],
Johnson KE, Voight BF,
Patterns of shared signatures of recent positive selection across human populations.,
Nat Ecol Evol,
04-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29459708,, Application
[Pubmed ID: 29459739],
Sugden LA, Atkinson EG, Fischer AP, Rong S, Henn BM, Ramachandran S,
Localization of adaptive variants in human genomes using averaged one-dependence estimation.,
Nat Commun,
02-19-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29459739,, Application
[Pubmed ID: 29467190],
Moon JM, Aronoff DM, Capra JA, Abbot P, Rokas A,
Examination of Signatures of Recent Positive Selection on Genes Involved in Human Sialic Acid Biology.,
G3 (Bethesda),
03-28-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29467190,, Application
[Pubmed ID: 29617830],
Librado P, Orlando L,
Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD.,
Mol Biol Evol,
06-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29617830,, Application
[Pubmed ID: 29662166],
Zeng J, de Vlaming R, Wu Y, Robinson MR, Lloyd-Jones LR, Yengo L, Yap CX, Xue A, Sidorenko J, McRae AF, et al.,
Signatures of negative selection in the genetic architecture of human complex traits.,
Nat Genet,
05-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29662166,, Application
[Pubmed ID: 29735716],
Champer J, Liu J, Oh SY, Reeves R, Luthra A, Oakes N, Clark AG, Messer PW,
Reducing resistance allele formation in CRISPR gene drive.,
Proc Natl Acad Sci U S A,
05-22-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29735716,, Application
[Pubmed ID: 29743267],
Rousselle M, Mollion M, Nabholz B, Bataillon T, Galtier N,
Overestimation of the adaptive substitution rate in fluctuating populations.,
Biol Lett,
05-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29743267,, Application
[Pubmed ID: 29760457],
Guo J, Wu Y, Zhu Z, Zheng Z, Trzaskowski M, Zeng J, Robinson MR, Visscher PM, Yang J,
Global genetic differentiation of complex traits shaped by natural selection in humans.,
Nat Commun,
05-14-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29760457,, Application
[Pubmed ID: 29791438],
Henden L, Lee S, Mueller I, Barry A, Bahlo M,
Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens.,
PLoS Genet,
05-23-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29791438,, Application
[Pubmed ID: 29846678],
Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S,
Adaptive Landscape of Protein Variation in Human Exomes.,
Mol Biol Evol,
08-01-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29846678,, Application
[Pubmed ID: 29967750],
Tennessen JA,
Gene buddies: linked balanced polymorphisms reinforce each other even in the absence of epistasis.,
PeerJ,
06-28-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=29967750,, Application
[Pubmed ID: 30111606],
Fijarczyk A, Dudek K, Niedzicka M, Babik W,
Balancing selection and introgression of newt immune-response genes.,
Proc Biol Sci,
08-15-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30111606,, Application
[Pubmed ID: 30125248],
Pouyet F, Aeschbacher S, Thiéry A, Excoffier L,
Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences.,
Elife,
08-23-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30125248,, Application
[Pubmed ID: 30283697],
Sato DX, Kawata M,
Positive and balancing selection on <i>SLC18A1</i> gene associated with psychiatric disorders and human-unique personality traits.,
Evol Lett,
08-21-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30283697,, Application
[Pubmed ID: 30295866],
Booker TR, Keightley PD,
Understanding the factors that shape patterns of nucleotide diversity in the house mouse genome.,
Mol Biol Evol,
10-08-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30295866,, Application
[Pubmed ID: 30315068],
Harris AM, Garud NR, DeGiorgio M,
Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity.,
Genetics,
10-12-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30315068,, Application
[Pubmed ID: 30346959],
Kim BY, Huber CD, Lohmueller KE,
Deleterious variation shapes the genomic landscape of introgression.,
PLoS Genet,
10-22-2018,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30346959,, Application
[Pubmed ID: 30517680],
Haller BC, Messer PW,
SLiM 3: Forward Genetic Simulations Beyond the Wright-Fisher Model.,
Mol Biol Evol,
03-01-2019,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30517680,Primary Citation
[Pubmed ID: 30565882],
Haller BC, Galloway J, Kelleher J, Messer PW, Ralph PL,
Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes.,
Mol Ecol Resour,
03-01-2019,
https://www.ncbi.nlm.nih.gov/pubmed/?term=30565882,Primary Citation
[Pubmed ID: 37130229],
Haller BC, Messer PW,
SLiM 4: Multispecies Eco-Evolutionary Modeling.,
Am Nat,
05-01-2023,
https://www.ncbi.nlm.nih.gov/pubmed/?term=37130229,Primary Citation