GSR: Simulator - stdpopsim v0.2

AttributeValue
Title stdpopsim v0.2
Short Description Community-maintained library of standard population genetic simulation models.
Long Description stdpopsim provides reproducible population genetic simulations using published demographic histories, genome assemblies, recombination maps, annotations, and engines such as msprime and SLiM.
Keywords population genetics; genome simulation; demographic models; msprime; SLiM; tree sequences
Version 0.3.0
Homepagehttps://popsim-consortium.github.io/stdpopsim-docs/stable/
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation MethodForward-time,
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseGNU Public License,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

No example publication using stdpopsim v0.2 has been provided.

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