GSR: Simulator - SVEngine

AttributeValue
Title SVEngine
Short Description Allele Specific and Haplotype Aware Structural Variants Simulator
Long Description SVEngine is a multi-purpose and self-contained simulator for whole genome scale spike-in of thousands of SV events of various types in both single-sample and matched sample scenarios.
Project Started 2017
Last Release 5 years, 11 months ago
Homepagehttps://bitbucket.org/charade/svengine/src/master/
Citations Xia LC, Ai D, Lee H, Andor N, Li C, Zhang NR, Ji HP, SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution., Gigascience, July 1, 2018 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
✔ Support

Last evaluatedApril 27, 2021 (1601 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
VariationsCNV,
Simulation MethodOther,
Input
Data TypeReference genome,
File formatFstat, Other,
Output
Data Type
Sequencing ReadsIllumina,
File FormatFasta or Fastq, SAM or BAM,
Sample TypeRandom or Independent, Extended or Complete Pedigrees,
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguagePython,
LicenseBSD,
GSR CertificationAccessibility, Documentation, Support,

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using SVEngine has been provided.

Please propose new citations if you are aware of publications that use this software.


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