GSR: Simulator - SVEngine
Attribute | Value |
---|---|
Title | SVEngine |
Short Description | Allele Specific and Haplotype Aware Structural Variants Simulator |
Long Description | SVEngine is a multi-purpose and self-contained simulator for whole genome scale spike-in of thousands of SV events of various types in both single-sample and matched sample scenarios. |
Project Started | 2017 |
Last Release | 4 years, 5 months ago |
Homepage | https://bitbucket.org/charade/svengine/src/master/ |
Citations | Xia LC, Ai D, Lee H, Andor N, Li C, Zhang NR, Ji HP, SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution., Gigascience, 07-01-2018 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | 04-27-2021 (1082 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | CNV, |
Simulation Method | Other, |
Input | |
Data Type | Reference genome, |
File format | Fstat, Other, |
Output | |
Data Type | |
Sequencing Reads | Illumina, |
File Format | Fasta or Fastq, SAM or BAM, |
Sample Type | Random or Independent, Extended or Complete Pedigrees, |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | Python, |
License | BSD, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using SVEngine has been provided.
Please propose new citations if you are aware of publications that use this software.