GSR: Simulator - TEvarSim

AttributeValue
TitleTEvarSim
Short DescriptionSimulator for polymorphic transposable-element variants and sequencing reads.
Long DescriptionTEvarSim simulates real or random TE insertions and deletions, population-scale genomes, short- and long-read sequencing data, VCF files, and benchmark comparisons for TE variant detection.
Keywordstransposable elements; TE variants; genome simulation; short reads; long reads; VCF; Python
Version1.0.4
Homepagehttps://www.dllab.org/TEvarSim
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence, Sequencing Reads,
VariationsSingle Nucleotide Variation, Insertion and Deletion,
Simulation Method
Input
Data TypeReference genome,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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