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GSR: Simulator - TKSM
| Attribute | Value |
|---|---|
| Title | TKSM |
| Short Description | Modular simulator for transcriptomic long-read sequencing. |
| Long Description | TKSM models long-read transcriptomic sequencing as chainable modules executed with Snakemake, including modules for transcript abundance, molecule transformations, error/quality models, truncation, and final FASTA/FASTQ output. |
| Keywords | long-read sequencing; transcriptomics; RNA-seq; Snakemake; modular simulation; Bioconda |
| Homepage | https://github.com/vpc-ccg/tksm |
| Citations | |
| GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
| Attribute Category | Attribute |
|---|---|
| Target | |
| Type of Simulated Data | Sequencing Reads, |
| Variations | |
| Simulation Method | |
| Input | |
| Data Type | |
| File format | |
| Output | |
| Data Type | Genotype or Sequence, |
| Sequencing Reads | |
| File Format | Fasta or Fastq, |
| Sample Type | |
| Phenotype | |
| Trait Type | |
| Determinants | |
| Evolutionary Features | |
| Demographic | |
| Population Size Changes | |
| Gene Flow | |
| Spatiality | |
| Life Cycle | |
| Mating System | |
| Fecundity | |
| Natural Selection | |
| Determinant | |
| Models | |
| Recombination | |
| Mutation Models | |
| Events Allowed | |
| Other | |
| Interface | Command-line, Script-based, |
| Development | |
| Tested Platforms | Linux and Unix, |
| Language | |
| License | |
| GSR Certification |
Number of Primary Citations: 0
Number of Non-Primary Citations: 0
No example publication using TKSM has been provided.
Please propose new citations if you are aware of publications that use this software.