GSR: Simulator - triadSim

AttributeValue
Title triadSim
Short Description R package for simulating triad, case-control, and quantitative-trait genotypes with realistic LD.
Long Description TriadSim resamples genotype fragments from existing case-parent triad GWAS data to preserve allele frequencies, LD, and transmission patterns while allowing user-specified spiked-in genetic effects, epistasis, gene-environment interactions, homogeneous or stratified populations, and several study designs.
Keywords R; CRAN; case-parent triads; case-control; quantitative trait; GWAS; linkage disequilibrium; epistasis; PLINK
Version 0.3.1
Homepagehttps://cran.r-project.org/package=TriadSim
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataGenotype at Genetic Markers, Sequencing Reads,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguageR,
License
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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