GSR: Simulator - tstrait

AttributeValue
Title tstrait
Short Description Quantitative-trait simulator for tskit tree sequences and ARGs.
Long Description tstrait simulates quantitative traits on tree sequences, sampling genetic effect sizes from multiple distributions, modeling pleiotropic phenotypes and environmental noise, and computing genetic values for individuals, nodes, and edges.
Keywords quantitative traits; ARG; tree sequence; tskit; phenotype simulation; Python
Version 0.1.2
Homepagehttps://tskit.dev/tstrait/
Citations
GSR Certification This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification.
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation Method
Input
Data TypeEmpirical,
File format
Output
Data TypeGenotype or Sequence,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
DeterminantsMultiple Genetic Markers,
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line, Script-based,
Development
Tested PlatformsLinux and Unix,
LanguagePython,
LicenseMIT,
GSR Certification

Number of Primary Citations: 0

Number of Non-Primary Citations: 0

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