GSR: Simulator - XS
|Short Description||a FASTQ read simulator|
|Long Description||is a skilled FASTQ read simulation tool, flexible, portable (does not need a reference sequence) and tunable in terms of sequence complexity. XS handles Ion Torrent, Roche-454, Illumina and ABI-SOLiD simulation sequencing types. It has several running modes, depending on the time and memory available, and is aimed at testing computing infrastructures, namely cloud computing of large-scale projects, and testing FASTQ compression algorithms. Moreover, XS offers the possibility of simulating the three main FASTQ components individually (headers, DNA sequences and quality-scores).|
|Citations||Pratas D, Pinho AJ, Rodrigues JM, XS: a FASTQ read simulator., BMC Res Notes, 01-16-2014 [ Abstract, cited in PMC ]|
|Last evaluated||10-01-2020 (15 days ago)|
|Type of Simulated Data||Sequencing Reads,|
|Simulation Method||Standard Coalescent, Exact Coalescent, Forward-time, Resample Existing Data, Phylogenetic, Gene dropping, Other,|
|Population Size Changes|
|GSR Certification||Accessibility, Documentation, Support,|
No example publication using XS has been provided.
Please propose new citations if you are aware of publications that use this software.