GSR: Simulator - zingeR

The zingeR package is not yet public.

AttributeValue
Title zingeR
Short Description zingeR unlocks RNA-seq tools for zero-inflation applications by estimating the probabilities that a zero belongs to the count component.
Long Description zingeR is a software package that unlocks RNA-seq tools for zero-inflation applications by estimating the posterior probabilities that a zero belongs to the count component. These observation-level probabilities can be used as weights in RNA-seq pipelines.
Version 0.1.0
Project Started 2017
Last Release 8 years, 10 months ago
Homepagehttps://github.com/statOmics/zingeR
Citations Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L, Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications., Genome Biol, Feb. 26, 2018 [ Abstract, cited in PMC ]
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Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated Data
Variations
Simulation Method
Input
Data Type
File format
Output
Data Type
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
Interface
Development
Tested Platforms
LanguageR,
License
GSR Certification

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

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