GSR: Simulator - Zombi
Attribute | Value |
---|---|
Title | Zombi |
Short Description | Zombi generates species trees, gene trees and sequences. |
Long Description | Zombi is a flexible platform of genome evolution which can be of great interest to those who want to test different evolutionary hypotheses under simulations and need to use a fast and easy-to-use tool to generate species trees, gene trees or sequences. Zombi's output is especially simple and easy to read understand and parse. |
Version | 1.0.1 |
Project Started | 2019 |
Last Release | 6 years ago |
Homepage | https://github.com/AADavin/Zombi |
Citations | Davín AA, Tricou T, Tannier E, de Vienne DM, Szöllősi GJ, Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages., Bioinformatics, Feb. 15, 2020 [ Abstract, cited in PMC ] |
GSR Certification | ✔ Accessibility |
Last evaluated | March 8, 2022 (1138 days ago) |
Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
Attribute Category | Attribute |
---|---|
Target | |
Type of Simulated Data | Haploid DNA Sequence, |
Variations | |
Simulation Method | |
Input | |
Data Type | |
File format | |
Output | |
Data Type | Phylogenetic Tree, |
Sequencing Reads | |
File Format | |
Sample Type | |
Phenotype | |
Trait Type | |
Determinants | |
Evolutionary Features | |
Demographic | |
Population Size Changes | |
Gene Flow | |
Spatiality | |
Life Cycle | |
Mating System | |
Fecundity | |
Natural Selection | |
Determinant | |
Models | |
Recombination | |
Mutation Models | |
Events Allowed | |
Other | |
Interface | Command-line, |
Development | |
Tested Platforms | |
Language | Python, |
License | GNU Public License, |
GSR Certification | Accessibility, Documentation, Support, |
Number of Primary Citations: 1
Number of Non-Primary Citations: 0
No example publication using Zombi has been provided.
Please propose new citations if you are aware of publications that use this software.