GSR: Simulator - Zombi

AttributeValue
Title Zombi
Short Description Zombi generates species trees, gene trees and sequences.
Long Description Zombi is a flexible platform of genome evolution which can be of great interest to those who want to test different evolutionary hypotheses under simulations and need to use a fast and easy-to-use tool to generate species trees, gene trees or sequences. Zombi's output is especially simple and easy to read understand and parse.
Version 1.0.1
Project Started 2019
Last Release 6 years, 3 months ago
Homepagehttps://github.com/AADavin/Zombi
Citations Davín AA, Tricou T, Tannier E, de Vienne DM, Szöllősi GJ, Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages., Bioinformatics, Feb. 15, 2020 [ Abstract, cited in PMC ]
GSR Certification

✔ Accessibility
✔ Documentation
Application
✔ Support

Last evaluatedMarch 8, 2022 (1285 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Attribute CategoryAttribute
Target
Type of Simulated DataHaploid DNA Sequence,
Variations
Simulation Method
Input
Data Type
File format
Output
Data TypePhylogenetic Tree,
Sequencing Reads
File Format
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested Platforms
LanguagePython,
LicenseGNU Public License,
GSR CertificationAccessibility, Documentation, Support,

Number of Primary Citations: 1

Number of Non-Primary Citations: 0

No example publication using Zombi has been provided.

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