a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination Long Description (required)
CoreSimul is a forward-in-time simulator of core genome evolution for prokaryotes modeling homologous recombination. Simulations are guided by a phylogenetic tree and incorporate different substitution models, including models of codon selection. https://github.com/lbobay/CoreSimul
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 32580695 ],
Bobay LM ,
CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination. ,
BMC Bioinformatics ,
06-24-2020 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=32580695, Primary Citation
[Pubmed ID: 33238876 ],
Stott CM, Bobay LM ,
Impact of homologous recombination on core genome phylogenies. ,
BMC Genomics ,
11-25-2020 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=33238876, , Application
[Pubmed ID: 33332358 ],
Bobay LM, O'Donnell AC, Ochman H ,
Recombination events are concentrated in the spike protein region of Betacoronaviruses. ,
PLoS Genet ,
12-17-2020 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=33332358, , Application
[Pubmed ID: 36357919 ],
Diop A, Torrance EL, Stott CM, Bobay LM ,
Gene flow and introgression are pervasive forces shaping the evolution of bacterial species. ,
Genome Biol ,
11-10-2022 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=36357919, , Application