A customized read simulator Long Description (required)
CuReSim (Customized Read Simulator) is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms. CuReSim is developed in Java and is distributed as an executable jar file. Wrappers to integrate CuReSim in Galaxy are also available. http://www.pegase-biosciences.com/curesim-a-customized-read-simulator/
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
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Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 24708189 ],
Caboche S, Audebert C, Lemoine Y, Hot D ,
Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data. ,
BMC Genomics ,
04-05-2014 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24708189, Primary Citation
[Pubmed ID: 36475728 ],
Anthony RM, Tagliani E, Nikolayevskyy V, de Zwaan R, Mulder A, Kamst M, Ködmön C, van der Werf MJ, Cirillo D, van Soolingen D, et al. ,
Experiences from 4 Years of Organization of an External Quality Assessment for Mycobacterium tuberculosis Whole-Genome Sequencing in the European Union/European Economic Area. ,
Microbiol Spectr ,
02-14-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=36475728, , Application