A Next-Generation Sequencing Simulator for Metagenomics Long Description (required)
NeSSM is a tool to generate Next-Generation Sequencing (NGS) reads with parameters set by users. The goal of NeSSM is to generate metagenome sequencing reads close to the reality. Currently, 454, Illumina sequencing platforms are supported. It can help develop methods or systems for metagenomics analysis. http://cbb.sjtu.edu.cn/~ccwei/pub/software/NeSSM.php
Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator.
Every sub-attribute is selected Not all sub-attributes are selectedFill Clear Expand Collapse Reset
Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s).
Can't Find the Attribute You Are Looking For? If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the Additional Comment box of the Submit tab .
Summary of Proposed Changes Current Citations/Applications
[Pubmed ID: 24124490 ],
Jia B, Xuan L, Cai K, Hu Z, Ma L, Wei C ,
NeSSM: a Next-generation Sequencing Simulator for Metagenomics. ,
PLoS One ,
10-04-2013 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=24124490, Primary Citation
[Pubmed ID: 36378489 ],
Gupta VK, Bakshi U, Chang D, Lee AR, Davis JM 3rd, Chandrasekaran S, Jin YS, Freeman MF, Sung J ,
TaxiBGC: a Taxonomy-Guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes. ,
mSystems ,
12-20-2022 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=36378489, , Application
[Pubmed ID: 36730456 ],
Satoh S, Tanaka R, Yokono M, Endoh D, Yabuki T, Tanaka A ,
Phylogeny analysis of whole protein-coding genes in metagenomic data detected an environmental gradient for the microbiota. ,
PLoS One ,
02-02-2023 ,
https://www.ncbi.nlm.nih.gov/pubmed/?term=36730456, , Application