GSR: Simulator - SimLoRD

Basic Package Attributes
AttributeValue
Title SimLoRD
Short Description SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model.
Long Description SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence.
Version 1.0.4
Project Started 2016
Last Release 1 year, 8 months ago
Homepagehttps://bitbucket.org/genomeinformatics/simlord/src/master/
Citations Stöcker BK, Köster J, Rahmann S, SimLoRD: Simulation of Long Read Data., Bioinformatics, 09-01-2016 [ Abstract, cited in PMC ]
GSR Certification

Accessibility
Documentation
Application
Support

Last evaluated06-22-2021 (87 days ago)
Author verificationThe basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator.
Detailed Attributes
Attribute CategoryAttribute
Target
Type of Simulated DataSequencing Reads,
Variations
Simulation Method
Input
Data TypeOther,
File format
Output
Data Type
Sequencing ReadsIllumina, Roche 454, SOLiD, IonTorrent, PacBio, Nanopore, Other,
File FormatFasta or Fastq,
Sample Type
Phenotype
Trait Type
Determinants
Evolutionary Features
Demographic
Population Size Changes
Gene Flow
Spatiality
Life Cycle
Mating System
Fecundity
Natural Selection
Determinant
Models
Recombination
Mutation Models
Events Allowed
Other
InterfaceCommand-line,
Development
Tested PlatformsWindows, Mac OS X, Linux and Unix,
LanguagePython,
LicenseMIT,
GSR CertificationAccessibility, Documentation, Support,

No example publication using SimLoRD has been provided.

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