a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm Long Description (required) SpartaABC is an Approximate Bayesian Computation (ABC) reject algorithm to infer indel parameters from sequence data.
It focuses on the inference of three indel parameters: IR — the indel-to-substitution rate ratio, A — the shape parameter for the power law distribution controlling the indel length, and RL — the root length parameter.
SpartaABC extracts a vector of summary statistics from its input; it then performs repeated simulations using an integrated sequence simulator (Fletcher and Yang 2009, Cartwright 2016) under various indel parameters. From each such simulated dataset it extracts a vector of summary statistics and computes its distance from the vector extracted for the input using a weighted Euclidean distance. http://spartaabc.tau.ac.il/webserver email@example.com Step 1: Use the attribute tree to add new attributes or remove pre-selected attributes to describe the simulator. Every sub-attribute is selected Not all sub-attributes are selected Fill Clear Expand Collapse Reset Summary of Proposed Changes Step 2: Review list of proposed attribute addition(s) and subtraction(s). Can't Find the Attribute You Are Looking For?
If you would like to propose an attribute that you cannot find in the tree above, or if you would like to add a clarification to one or more attributes for this simulator (e.g. a specific file format for attribute /Output/File Format/Other), please list them in the
Additional Comment box of the Submit tab. Summary of Proposed Changes Current Citations/Applications
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm. Nucleic Acids Res,
https://www.ncbi.nlm.nih.gov/pubmed/?term=28460062, Primary Citation