GSR: Simulator - SpartaABC
| Attribute | Value |
|---|---|
| Title | SpartaABC |
| Short Description | a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm |
| Long Description | SpartaABC is an Approximate Bayesian Computation (ABC) reject algorithm to infer indel parameters from sequence data. It focuses on the inference of three indel parameters: IR — the indel-to-substitution rate ratio, A — the shape parameter for the power law distribution controlling the indel length, and RL — the root length parameter. SpartaABC extracts a vector of summary statistics from its input; it then performs repeated simulations using an integrated sequence simulator (Fletcher and Yang 2009, Cartwright 2016) under various indel parameters. From each such simulated dataset it extracts a vector of summary statistics and computes its distance from the vector extracted for the input using a weighted Euclidean distance. |
| Version | 1.0 |
| Last Release | 4 years, 6 months ago |
| Homepage | http://spartaabc.tau.ac.il/webserver |
| Citations | Ashkenazy H, Levy Karin E, Mertens Z, Cartwright RA, Pupko T, SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm., Nucleic Acids Res, 07-03-2017 [ Abstract, cited in PMC ] |
| GSR Certification | This simulator has not yet been evaluated for GSR Certification. Learn more about or request GSR Certification. |
| Author verification | The basic description provided was derived from a website or publications by the GSR team and has not yet been verified by the simulation author. To modify this entry or add more information, propose changes to this simulator. |
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No example publication using SpartaABC has been provided.
Please propose new citations if you are aware of publications that use this software.